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Publications

Peer-Reviewed Publications

Krause, M.*, Niazi, A.M.*, Labun, K., Müller F.S., Cleuren Y. N. T., Valen E. (2019) tailfindr: Alignment-free poly(A) length measurement for Oxford Nanopore RNA and DNA sequencing. RNA.
doi: 110.1261/rna.071332.119
[PDF] [tailfindr Software] [Reproducible Analyses]

* Joint first authors

 

Online-decoding-of-object-based-visual-attentionNiazi, A. M., van den Broek, P. L. C., Klanke, S., Barth, M., Poel, M., Desain, P. and van Gerven, M. A. J. (2013), Online decoding of object-based attention using real-time fMRI. European Journal of Neuroscience. doi: 10.1111/ejn.12405
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[PDF|HTML] [Supplementary Material] [Supplementary Movie]

Theses and Reports

PhD thesis adnan niaziComputational methods for studying RNA caps and poly(A)- tails at single-molecule resolution with Nanopore sequencing
PhD Thesis
University of Bergen
Year 2022
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Real-time-fMRI-decoding-reading-minds-using-brain-imaging_Adnan-Niazi-Masters_thesis-ReportReal-time fMRI Decoding: Reading Minds Using Brain Imaging
Masters Thesis
M.Sc. Human Media Interaction
University of Twente
Year 2012
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Development-of-real-time-fMRI-pipeline_at_Donders_institute_Internship-report-Adnan-NiaziDevelopment of  Real-time Functional Magnetic Resonance Imaging Pipeline at Donders Institute
Masters Internship Report
M.Sc. Human Media Interaction
University of Twente
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Saving Private Bryan_final_reportSaving Private Bryan
Project Report 
Human-Computer Interaction Course
University of Twente 
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investigating-N2pc-for-its-potential-uses-in-BCI-applicationsInvestigating N2pc for its Potential in BCI Applications
Project Report
Brain-Computer Interfacing Course
University of Twente
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Effect of Music Tempo in First-Person Shooter on Arousal and Aggression
Project Report
Computer Games Studies
University of Twente
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Development-of-low-cost-18-channel-simultaneous-sampling-EEG-data-acquisition-system-for-Brain-Computer-Interfacing18-Channel Simultaneous Sampling EEG DAQ for Brain-Computer Interfacing
Bachelor's Thesis
B.Sc. Electrical Engineering
N-W.F.P University of Engineering & Technology
Year 2008
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Media

Real-time-fMRI-decoding-IoVivat-27.2-2013-magazineArticleReal-time fMRI Decoding 
I/O Vivat Magazine
Volume 28.3 | 2013
Netherlands.

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 Poster Presentations

tailfindr: Alignment-free poly(A) length measurement for Oxford Nanopore RNA and DNA sequencing
ISMB/ECCB 2019
Basel, Switzerland.
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Mind-Reading-Real-time-decoding-of-visual-perception-and-imagery--BrainGain2012

Mind Reading: Real-time Decoding of Visual Perception and Imagery
BrainGain Conference 2012
Maastricht, Netherlands.
Winner of the Best Poster Presentation Award
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Analyze4d-A-tool-for-fMRI-visualization-and-voxel-time-course-analysis--BrainGain-2013Analyze4D: A Tool for fMRI Visualization and Voxel Time Course Analysis
BrainGain Conference 2013
Nijmegen, Netherlands.
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Donders-real-time-fmri-A-MATLAB-based-solution-for-real-time decoding-and-neurofeedback-studies--BrainGain-2013Donders real-time fMRI: A MATLAB-based Solution for Real-time Decoding and Neurofeedback Studies
BrainGain Conference 2013
Nijmegen, Netherlands.
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What-are-you-looking-at?Online-decoding-of-object-based-visual-attention-using real-time-fMRI--BrainGain-2013What Are You Looking At? Online Decoding of Object-based Visual Attention Using Real-time fMRI
BrainGain Conference 2013
Nijmegen, Netherlands.
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